Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 AC125374.1-201ENSMUST00000213573 1400 ntBASIC12.19□□□□□ -0.46
Chmp6P0C0A3 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Chmp6P0C0A3 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Chmp6P0C0A3 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Chmp6P0C0A3 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm17244-201ENSMUST00000192482 3416 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm8111-201ENSMUST00000117659 987 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm21092-201ENSMUST00000178995 955 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm27910-201ENSMUST00000185004 107 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm43966-201ENSMUST00000203301 612 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm45206-201ENSMUST00000206885 2285 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Rtn3-204ENSMUST00000088171 4973 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC12.18□□□□□ -0.46
Chmp6P0C0A3 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm43937-201ENSMUST00000204640 3122 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm16166-201ENSMUST00000118291 787 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm12176-201ENSMUST00000121420 875 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm23771-201ENSMUST00000178702 110 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Gm10109-202ENSMUST00000206890 1211 ntBASIC12.17□□□□□ -0.46
Chmp6P0C0A3 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.17□□□□□ -0.46
Chmp6P0C0A3 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms