Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Gm11475-201ENSMUST00000118482 476 ntBASIC14.44□□□□□ -0.1
Trim28Q62318 Sgcg-202ENSMUST00000121148 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Gm4858-201ENSMUST00000179064 735 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC14.44□□□□□ -0.1
Trim28Q62318 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Trim28Q62318 Olfr115-201ENSMUST00000076936 939 ntAPPRIS P2 BASIC14.44□□□□□ -0.1
Trim28Q62318 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Trim28Q62318 AC124732.3-201ENSMUST00000221835 1765 ntBASIC14.44□□□□□ -0.1
Trim28Q62318 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim28Q62318 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC14.44□□□□□ -0.1
Trim28Q62318 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Trim28Q62318 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim28Q62318 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Trim28Q62318 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim28Q62318 Gm6758-201ENSMUST00000119643 1055 ntBASIC14.43□□□□□ -0.1
Trim28Q62318 Gm11993-201ENSMUST00000121861 820 ntBASIC14.43□□□□□ -0.1
Trim28Q62318 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC14.43□□□□□ -0.1
Trim28Q62318 Gm25569-201ENSMUST00000157175 131 ntBASIC14.43□□□□□ -0.1
Trim28Q62318 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Trim28Q62318 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim28Q62318 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Trim28Q62318 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC14.43□□□□□ -0.1
Trim28Q62318 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Trim28Q62318 AC162932.1-201ENSMUST00000219209 872 ntBASIC14.43□□□□□ -0.1
Trim28Q62318 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Gm25125-201ENSMUST00000083340 136 ntBASIC14.43□□□□□ -0.1
Trim28Q62318 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim28Q62318 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim28Q62318 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim28Q62318 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim28Q62318 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trim28Q62318 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Gm14113-201ENSMUST00000121399 976 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC14.42□□□□□ -0.1
Trim28Q62318 Gm16167-201ENSMUST00000160428 1065 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Gm37860-201ENSMUST00000195380 1034 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Gm43564-201ENSMUST00000196185 211 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Gm18499-201ENSMUST00000220808 1021 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Gm42833-201ENSMUST00000196019 2124 ntBASIC14.42□□□□□ -0.1
Trim28Q62318 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim28Q62318 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim28Q62318 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms