Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm6439-201ENSMUST00000199849 862 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 AC102569.1-201ENSMUST00000221563 685 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Snora73b-201ENSMUST00000083419 205 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm29358-202ENSMUST00000187941 3227 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm5542-201ENSMUST00000195485 1089 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm43520-201ENSMUST00000197996 164 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm45550-201ENSMUST00000209380 946 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 AC135469.1-201ENSMUST00000225984 772 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm9244-201ENSMUST00000056767 2129 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm6655-201ENSMUST00000201932 1309 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm38140-201ENSMUST00000193617 2755 ntBASIC12□□□□□ -0.49
Upf3bQ3ULL6 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Upf3bQ3ULL6 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 CT010506.1-201ENSMUST00000223673 349 ntBASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms