Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col1a1P11087 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Col1a1P11087 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col1a1P11087 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col1a1P11087 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
Col1a1P11087 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col1a1P11087 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col1a1P11087 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col1a1P11087 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Gm6755-201ENSMUST00000100598 864 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm6740-201ENSMUST00000100617 864 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm13426-201ENSMUST00000117887 795 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 2410152P15Rik-201ENSMUST00000137405 871 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Eif4e1b-210ENSMUST00000152204 859 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Gm7805-201ENSMUST00000154348 448 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm17782-201ENSMUST00000174345 880 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm27833-201ENSMUST00000184285 124 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm42859-201ENSMUST00000199572 193 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm5738-201ENSMUST00000206016 779 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC13.02□□□□□ -0.33
Col1a1P11087 Gm4032-203ENSMUST00000211600 531 ntTSL 3 BASIC13.02□□□□□ -0.33
Col1a1P11087 Abracl-203ENSMUST00000218994 425 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Col1a1P11087 AC122840.4-201ENSMUST00000221310 1285 ntTSL 5 BASIC13.02□□□□□ -0.33
Col1a1P11087 BX649293.1-201ENSMUST00000227437 631 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Hspb11-201ENSMUST00000046558 608 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 1110034G24Rik-201ENSMUST00000061891 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Olfr1121-201ENSMUST00000062555 945 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Col1a1P11087 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Col1a1P11087 AC154537.1-201ENSMUST00000226101 1304 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Matn2-203ENSMUST00000226766 3252 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC13.02□□□□□ -0.33
Col1a1P11087 Gm13608-201ENSMUST00000121807 1406 ntBASIC13.02□□□□□ -0.33
Col1a1P11087 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.33
Col1a1P11087 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col1a1P11087 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Erich3-203ENSMUST00000189969 3460 ntBASIC13.01□□□□□ -0.33
Col1a1P11087 Psmb3-201ENSMUST00000103147 766 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC13.01□□□□□ -0.33
Col1a1P11087 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC13.01□□□□□ -0.33
Col1a1P11087 Gm4775-201ENSMUST00000169588 402 ntBASIC13.01□□□□□ -0.33
Col1a1P11087 Gm17944-201ENSMUST00000186351 643 ntBASIC13.01□□□□□ -0.33
Col1a1P11087 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC13.01□□□□□ -0.33
Col1a1P11087 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 AC118639.1-202ENSMUST00000226957 653 ntBASIC13.01□□□□□ -0.33
Col1a1P11087 Mptx1-201ENSMUST00000027816 799 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Cog3-203ENSMUST00000227473 4197 ntBASIC13.01□□□□□ -0.33
Col1a1P11087 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC13.01□□□□□ -0.33
Col1a1P11087 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col1a1P11087 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col1a1P11087 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Col1a1P11087 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Gm1995-201ENSMUST00000220838 2602 ntBASIC13□□□□□ -0.33
Col1a1P11087 Zscan21-201ENSMUST00000062350 2252 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Gm37058-201ENSMUST00000193393 1644 ntBASIC13□□□□□ -0.33
Col1a1P11087 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Col1a1P11087 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Col1a1P11087 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col1a1P11087 Olfr874-201ENSMUST00000115004 933 ntAPPRIS P1 BASIC13□□□□□ -0.33
Col1a1P11087 Gm6216-201ENSMUST00000182390 687 ntBASIC13□□□□□ -0.33
Col1a1P11087 Mir124-2hg-203ENSMUST00000186923 673 ntTSL 3 BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms