Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Acsl5-201ENSMUST00000043150 4243 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Kdm5a-201ENSMUST00000005108 10944 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Arnt2-207ENSMUST00000208232 6047 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Olfr1349-206ENSMUST00000213656 4492 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Gm45161-201ENSMUST00000207316 2263 ntBASIC9.24□□□□□ -0.93
Hmgb3O54879 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Dlg2-201ENSMUST00000074273 5278 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Hmgb3O54879 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Zfp398-202ENSMUST00000114598 8328 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Hmgb3O54879 Mfn2-204ENSMUST00000105716 4241 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Eif2ak4-201ENSMUST00000005233 5212 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Kcnj15-206ENSMUST00000113859 5046 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Phf3-205ENSMUST00000186733 7567 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm43807-201ENSMUST00000200678 1781 ntBASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm10434-201ENSMUST00000101158 471 ntBASIC9.23□□□□□ -0.93
Hmgb3O54879 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm8176-201ENSMUST00000191297 1099 ntBASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm9794-201ENSMUST00000202370 423 ntBASIC9.23□□□□□ -0.93
Hmgb3O54879 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Pard3b-203ENSMUST00000094906 7676 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Zhx3-202ENSMUST00000103112 9109 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Csnk1g1-214ENSMUST00000206594 2482 ntAPPRIS P2 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hmgb3O54879 Gm43999-201ENSMUST00000204286 2889 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Myo7b-201ENSMUST00000134663 6621 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Orc4-201ENSMUST00000028098 4066 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Fam13c-201ENSMUST00000062883 3262 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Clcn3-202ENSMUST00000056508 5684 ntAPPRIS P4 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Card14-201ENSMUST00000053245 3958 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Atp11c-202ENSMUST00000101527 6044 ntAPPRIS P4 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Rnf2-201ENSMUST00000076110 3160 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm12490-201ENSMUST00000120255 560 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Auts2-212ENSMUST00000178555 309 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm18187-201ENSMUST00000196476 984 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 AC166344.1-202ENSMUST00000224139 234 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 104.6 ms