Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm13916-201ENSMUST00000117368 628 ntBASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm5419-201ENSMUST00000119301 527 ntBASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm23153-201ENSMUST00000175323 313 ntBASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Smc1aQ9CU62 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm3836-201ENSMUST00000211377 1613 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm15725-201ENSMUST00000119947 1090 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm8492-201ENSMUST00000182375 987 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm37905-201ENSMUST00000195310 341 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm9645-201ENSMUST00000197131 792 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm43186-201ENSMUST00000198130 824 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm44980-201ENSMUST00000205826 314 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Mirlet7i-201ENSMUST00000083472 85 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Gm43773-201ENSMUST00000198548 2162 ntBASIC12.6□□□□□ -0.39
Smc1aQ9CU62 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms