Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm19178-201ENSMUST00000217524 1819 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Gm10699-201ENSMUST00000098916 2130 ntBASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Sh3rf1Q69ZI1 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm8566-201ENSMUST00000120174 465 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm12962-202ENSMUST00000144212 691 ntTSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm6397-201ENSMUST00000161973 1069 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm10774-201ENSMUST00000188689 204 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm42629-201ENSMUST00000199063 1102 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm9132-201ENSMUST00000210182 832 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 AC140293.1-201ENSMUST00000225626 1247 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sh3rf1Q69ZI1 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm10152-201ENSMUST00000193475 1344 ntBASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm43807-201ENSMUST00000200678 1781 ntBASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm8343-201ENSMUST00000182705 994 ntBASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 Gm2965-201ENSMUST00000198365 343 ntBASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC11.42□□□□□ -0.58
Sh3rf1Q69ZI1 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms