Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm18556-201ENSMUST00000219748 1031 ntBASIC11.8□□□□□ -0.52
Usp4P35123 Olfr1347-205ENSMUST00000220413 964 ntBASIC11.8□□□□□ -0.52
Usp4P35123 Gm9826-201ENSMUST00000029124 1299 ntBASIC11.8□□□□□ -0.52
Usp4P35123 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Usp4P35123 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Usp4P35123 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 AC149588.2-201ENSMUST00000228182 1859 ntBASIC11.8□□□□□ -0.52
Usp4P35123 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Unc5cl-201ENSMUST00000074574 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp4P35123 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Gm33366-201ENSMUST00000195583 3827 ntBASIC11.79□□□□□ -0.52
Usp4P35123 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC11.79□□□□□ -0.52
Usp4P35123 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 CT009713.5-203ENSMUST00000224218 2079 ntBASIC11.79□□□□□ -0.52
Usp4P35123 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Arpp21-217ENSMUST00000161412 1687 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Usp4P35123 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC11.79□□□□□ -0.52
Usp4P35123 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC11.79□□□□□ -0.52
Usp4P35123 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Gm18038-201ENSMUST00000197900 485 ntBASIC11.79□□□□□ -0.52
Usp4P35123 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Usp4P35123 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Usp4P35123 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC11.79□□□□□ -0.52
Usp4P35123 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC11.79□□□□□ -0.52
Usp4P35123 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp4P35123 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp4P35123 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC11.78□□□□□ -0.52
Usp4P35123 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Usp4P35123 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Gm22133-201ENSMUST00000102082 109 ntBASIC11.78□□□□□ -0.52
Usp4P35123 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC11.78□□□□□ -0.52
Usp4P35123 Gm23699-201ENSMUST00000158835 135 ntBASIC11.78□□□□□ -0.52
Usp4P35123 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC11.78□□□□□ -0.52
Usp4P35123 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC11.78□□□□□ -0.52
Usp4P35123 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Mir7677-201ENSMUST00000184226 67 ntBASIC11.78□□□□□ -0.52
Usp4P35123 Gm7467-201ENSMUST00000185173 652 ntBASIC11.78□□□□□ -0.52
Usp4P35123 Gm38117-201ENSMUST00000194653 939 ntBASIC11.78□□□□□ -0.52
Usp4P35123 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC11.78□□□□□ -0.52
Usp4P35123 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Usp4P35123 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp4P35123 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms