Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Sun1-205ENSMUST00000110883 3714 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Lhfpl2-201ENSMUST00000054274 4348 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Npc1l1-201ENSMUST00000004505 4467 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC9.12□□□□□ -0.95
Cdx1P18111 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm12036-201ENSMUST00000120008 530 ntBASIC9.12□□□□□ -0.95
Cdx1P18111 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC9.12□□□□□ -0.95
Cdx1P18111 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm4034-201ENSMUST00000187674 480 ntBASIC9.12□□□□□ -0.95
Cdx1P18111 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm44651-201ENSMUST00000207343 372 ntBASIC9.12□□□□□ -0.95
Cdx1P18111 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC9.12□□□□□ -0.95
Cdx1P18111 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC9.12□□□□□ -0.95
Cdx1P18111 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Cdx1P18111 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Cdx1P18111 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Anln-201ENSMUST00000040912 4605 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm40557-201ENSMUST00000220782 2736 ntTSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC9.12□□□□□ -0.95
Cdx1P18111 Ctso-201ENSMUST00000029649 3468 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 F730311O21Rik-201ENSMUST00000189288 5447 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Cdx1P18111 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC9.12□□□□□ -0.95
Cdx1P18111 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Cdx1P18111 Tmem184b-205ENSMUST00000228002 3315 ntBASIC9.11□□□□□ -0.95
Cdx1P18111 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Upf3b-201ENSMUST00000076265 2344 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm5860-202ENSMUST00000151038 1711 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Ppp2r2a-201ENSMUST00000089230 4010 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Celf5-202ENSMUST00000119060 4166 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC9.11□□□□□ -0.95
Cdx1P18111 1700019J19Rik-205ENSMUST00000216531 2813 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 P3h1-202ENSMUST00000081606 2820 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 B630019A10Rik-201ENSMUST00000149488 2407 ntTSL 2 BASIC9.11□□□□□ -0.95
Cdx1P18111 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Cdx1P18111 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC9.11□□□□□ -0.95
Cdx1P18111 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Ankrd11-202ENSMUST00000098334 8455 ntAPPRIS P2 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
Cdx1P18111 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm13736-201ENSMUST00000119272 253 ntBASIC9.11□□□□□ -0.95
Cdx1P18111 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Gm8712-201ENSMUST00000221090 701 ntBASIC9.11□□□□□ -0.95
Cdx1P18111 AC113031.8-201ENSMUST00000227856 631 ntBASIC9.11□□□□□ -0.95
Cdx1P18111 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Rasal1-205ENSMUST00000156722 3251 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 130.5 ms