Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm6655-201ENSMUST00000201932 1309 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm44897-201ENSMUST00000206187 1341 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm7537-201ENSMUST00000221660 1414 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm11783-201ENSMUST00000119549 885 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Scgb2b22-ps-201ENSMUST00000121947 340 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm14441-201ENSMUST00000121960 540 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm15881-201ENSMUST00000148792 942 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm13625-201ENSMUST00000149283 480 ntTSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 AU040972-201ENSMUST00000165610 1042 ntTSL 3 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Krtap22-2-201ENSMUST00000178913 380 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm9192-201ENSMUST00000183221 985 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm29640-201ENSMUST00000187972 278 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm20915-201ENSMUST00000191575 663 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm9132-201ENSMUST00000210182 832 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm18043-201ENSMUST00000216741 739 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm7940-201ENSMUST00000218195 769 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm6867-201ENSMUST00000219165 425 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm18387-201ENSMUST00000220333 702 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm29787-201ENSMUST00000222129 849 ntBASIC9.07□□□□□ -0.96
Hoxd3P09027 Uchl4-201ENSMUST00000039011 1162 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Olfr1093-201ENSMUST00000055273 969 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Olfr1099-201ENSMUST00000099871 1031 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hoxd3P09027 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hoxd3P09027 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC9.06□□□□□ -0.96
Hoxd3P09027 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Hoxd3P09027 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Hoxd3P09027 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Kcne3-203ENSMUST00000178946 1323 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Lyz2-201ENSMUST00000092163 1316 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Gm45199-201ENSMUST00000207640 1507 ntBASIC9.06□□□□□ -0.96
Hoxd3P09027 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hoxd3P09027 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms