Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Upf3bQ3ULL6 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 AC109214.1-201ENSMUST00000219520 1372 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm9915-201ENSMUST00000066196 1383 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm15528-201ENSMUST00000117821 864 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm13326-201ENSMUST00000118730 1011 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm8302-201ENSMUST00000119217 852 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm16071-201ENSMUST00000119589 793 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm11246-201ENSMUST00000120880 345 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm23771-201ENSMUST00000178702 110 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Mir7051-201ENSMUST00000184167 73 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm27910-201ENSMUST00000185004 107 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm17826-201ENSMUST00000189720 798 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm29067-201ENSMUST00000190821 470 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm37826-201ENSMUST00000195329 322 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 AC159002.1-201ENSMUST00000226714 924 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Gm6157-201ENSMUST00000199935 1897 ntBASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Upf3bQ3ULL6 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm5859-201ENSMUST00000165401 2324 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12218-201ENSMUST00000117666 399 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12616-201ENSMUST00000118594 382 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm22902-201ENSMUST00000158488 302 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC12.05□□□□□ -0.48
Upf3bQ3ULL6 Gm12624-201ENSMUST00000177615 382 ntBASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms