Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC17.09■□□□□ 0.33
Cux1P53564 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC17.09■□□□□ 0.33
Cux1P53564 Gm28505-201ENSMUST00000190466 680 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC17.09■□□□□ 0.33
Cux1P53564 AC141884.2-201ENSMUST00000228811 775 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Gimap7-201ENSMUST00000052503 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC17.09■□□□□ 0.33
Cux1P53564 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cux1P53564 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Cux1P53564 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC17.09■□□□□ 0.33
Cux1P53564 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cux1P53564 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC17.08■□□□□ 0.33
Cux1P53564 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Cux1P53564 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Cux1P53564 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Cux1P53564 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cux1P53564 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Cux1P53564 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC17.08■□□□□ 0.33
Cux1P53564 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC17.08■□□□□ 0.32
Cux1P53564 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Gm5510-201ENSMUST00000117826 486 ntBASIC17.08■□□□□ 0.32
Cux1P53564 Gm6238-201ENSMUST00000120999 465 ntBASIC17.08■□□□□ 0.32
Cux1P53564 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC17.08■□□□□ 0.32
Cux1P53564 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC17.08■□□□□ 0.32
Cux1P53564 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Cux1P53564 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Gm44420-201ENSMUST00000203669 490 ntBASIC17.08■□□□□ 0.32
Cux1P53564 Gm18123-201ENSMUST00000210874 822 ntBASIC17.08■□□□□ 0.32
Cux1P53564 AC101205.2-201ENSMUST00000226206 715 ntBASIC17.08■□□□□ 0.32
Cux1P53564 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 AC122811.1-201ENSMUST00000222257 2921 ntBASIC17.08■□□□□ 0.32
Cux1P53564 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Ap5s1-203ENSMUST00000110208 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cux1P53564 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
Cux1P53564 Gm43931-201ENSMUST00000204817 2870 ntBASIC17.07■□□□□ 0.32
Cux1P53564 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Gm12028-201ENSMUST00000118065 436 ntBASIC17.07■□□□□ 0.32
Cux1P53564 Gm27826-201ENSMUST00000175282 255 ntBASIC17.07■□□□□ 0.32
Cux1P53564 1700085C21Rik-201ENSMUST00000187123 1082 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Ighv1-70-201ENSMUST00000196509 351 ntBASIC17.07■□□□□ 0.32
Cux1P53564 AC107711.4-201ENSMUST00000228948 440 ntBASIC17.07■□□□□ 0.32
Cux1P53564 Gm5513-201ENSMUST00000072982 1218 ntBASIC17.07■□□□□ 0.32
Cux1P53564 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Gm12716-201ENSMUST00000120606 1354 ntBASIC17.07■□□□□ 0.32
Cux1P53564 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Cux1P53564 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Cux1P53564 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Cux1P53564 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Gm42833-201ENSMUST00000196019 2124 ntBASIC17.07■□□□□ 0.32
Cux1P53564 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cux1P53564 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC17.06■□□□□ 0.32
Cux1P53564 Gm24140-201ENSMUST00000122773 326 ntBASIC17.06■□□□□ 0.32
Cux1P53564 Gm6644-201ENSMUST00000186507 951 ntBASIC17.06■□□□□ 0.32
Cux1P53564 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC17.06■□□□□ 0.32
Cux1P53564 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cux1P53564 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC17.06■□□□□ 0.32
Cux1P53564 AC167565.1-201ENSMUST00000226980 1833 ntBASIC17.06■□□□□ 0.32
Cux1P53564 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC17.06■□□□□ 0.32
Cux1P53564 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cux1P53564 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Gm14148-201ENSMUST00000122433 1008 ntBASIC17.06■□□□□ 0.32
Cux1P53564 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC17.06■□□□□ 0.32
Cux1P53564 Gm14320-201ENSMUST00000137275 1023 ntTSL 3 BASIC17.06■□□□□ 0.32
Cux1P53564 Stk33-205ENSMUST00000141210 949 ntTSL 3 BASIC17.06■□□□□ 0.32
Cux1P53564 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cux1P53564 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 69.6 ms