Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Rfx1P48377 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Gm5616-201ENSMUST00000165252 384 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Gm8741-201ENSMUST00000174736 384 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC13.44□□□□□ -0.26
Rfx1P48377 Mir8109-201ENSMUST00000184375 117 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 Gm8856-201ENSMUST00000185254 1144 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Ighv4-2-201ENSMUST00000192975 362 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC13.44□□□□□ -0.26
Rfx1P48377 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Cts7-204ENSMUST00000225321 1257 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Dopey2-207ENSMUST00000227156 7340 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Rfx1P48377 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Rfx1P48377 Gm12799-201ENSMUST00000118151 2560 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Rfx1P48377 Zfp110-201ENSMUST00000004614 3591 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Rfx1P48377 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
Rfx1P48377 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 AA914427-201ENSMUST00000193194 1166 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Gm9353-201ENSMUST00000200472 604 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 Gm21027-201ENSMUST00000219300 1236 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 CT485787.1-201ENSMUST00000225617 968 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Gm25857-201ENSMUST00000082788 129 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Rfx1P48377 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Rfx1P48377 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.43□□□□□ -0.26
Rfx1P48377 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Rfx1P48377 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
Rfx1P48377 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Il1rap-202ENSMUST00000096129 4438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm5940-201ENSMUST00000117582 1068 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.42□□□□□ -0.26
Rfx1P48377 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 AY702102-202ENSMUST00000194651 1173 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC13.42□□□□□ -0.26
Rfx1P48377 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm7399-201ENSMUST00000032395 858 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 Gm10478-201ENSMUST00000084451 396 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Gm45041-201ENSMUST00000207366 3108 ntBASIC13.42□□□□□ -0.26
Rfx1P48377 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Rfx1P48377 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms