Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm15615-201ENSMUST00000118876 198 ntBASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Mup-ps29-201ENSMUST00000122281 202 ntBASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm9826-201ENSMUST00000029124 1299 ntBASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Gm45496-201ENSMUST00000209918 2917 ntBASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ddx56Q9D0R4 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm37368-201ENSMUST00000193173 3212 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm6831-202ENSMUST00000213025 1673 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Mup-ps26-201ENSMUST00000121751 202 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm8737-201ENSMUST00000122208 642 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm23045-201ENSMUST00000175041 96 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm23694-201ENSMUST00000179335 110 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Mrip-ps-201ENSMUST00000184613 940 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm37284-201ENSMUST00000193607 539 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm37466-201ENSMUST00000195692 652 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Mettl6-204ENSMUST00000227595 1027 ntBASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ddx56Q9D0R4 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ddx56Q9D0R4 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms