Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 Gm7895-201ENSMUST00000187459 1173 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Ighv5-7-201ENSMUST00000192302 244 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC13.47□□□□□ -0.25
Rfx1P48377 Gm45865-201ENSMUST00000211815 945 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 Gm6653-201ENSMUST00000218063 1288 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 Gm18615-201ENSMUST00000222919 1031 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.47□□□□□ -0.25
Rfx1P48377 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Rfx1P48377 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Tyro3-202ENSMUST00000110783 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Mindy4-201ENSMUST00000053094 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Gm8752-201ENSMUST00000173427 1694 ntBASIC13.47□□□□□ -0.25
Rfx1P48377 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Rfx1P48377 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm38273-201ENSMUST00000194987 2382 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 AC155245.1-201ENSMUST00000222266 1804 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Ttc23-201ENSMUST00000032774 2492 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm13392-201ENSMUST00000117708 150 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Gm13296-201ENSMUST00000117854 997 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Gm15207-201ENSMUST00000119259 442 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Gm11783-201ENSMUST00000119549 885 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm8343-201ENSMUST00000182705 994 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Gm27530-201ENSMUST00000184096 98 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Gm43433-201ENSMUST00000196573 481 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm18539-201ENSMUST00000204745 1090 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC13.46□□□□□ -0.25
Rfx1P48377 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm8399-201ENSMUST00000082300 1117 ntBASIC13.46□□□□□ -0.25
Rfx1P48377 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Rfx1P48377 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Rfx1P48377 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Rfx1P48377 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Rfx1P48377 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Rfx1P48377 Ddr1-201ENSMUST00000003628 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
Rfx1P48377 AC174797.1-201ENSMUST00000224339 1649 ntBASIC13.46□□□□□ -0.26
Rfx1P48377 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Rnf20-201ENSMUST00000029989 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.45□□□□□ -0.26
Rfx1P48377 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm43908-201ENSMUST00000205074 1472 ntBASIC13.45□□□□□ -0.26
Rfx1P48377 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC13.45□□□□□ -0.26
Rfx1P48377 Aprt-ps-201ENSMUST00000212311 505 ntBASIC13.45□□□□□ -0.26
Rfx1P48377 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Rfx1P48377 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Rfx1P48377 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm10829-201ENSMUST00000202084 2988 ntBASIC13.45□□□□□ -0.26
Rfx1P48377 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC13.45□□□□□ -0.26
Rfx1P48377 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Rfx1P48377 Gm37368-201ENSMUST00000193173 3212 ntBASIC13.45□□□□□ -0.26
Rfx1P48377 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Rfx1P48377 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Gm43482-201ENSMUST00000202797 1861 ntBASIC13.44□□□□□ -0.26
Rfx1P48377 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Rfx1P48377 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Rfx1P48377 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Rfx1P48377 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.44□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms