Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdc40Q9DC48 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdc40Q9DC48 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Cdc40Q9DC48 Gm45191-201ENSMUST00000205846 5439 ntBASIC10.55□□□□□ -0.72
Cdc40Q9DC48 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdc40Q9DC48 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdc40Q9DC48 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Asb1-201ENSMUST00000027538 5826 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm1848-201ENSMUST00000120711 789 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm11836-201ENSMUST00000121022 441 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm16397-201ENSMUST00000122201 494 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm8737-201ENSMUST00000122208 642 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm13182-201ENSMUST00000122241 312 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm44270-201ENSMUST00000203084 1234 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm45113-201ENSMUST00000207518 165 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm7600-201ENSMUST00000209657 785 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 AC166344.1-201ENSMUST00000223745 674 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 AC132901.1-201ENSMUST00000224345 508 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Limch1-201ENSMUST00000038188 5903 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm6430-201ENSMUST00000054664 1248 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Gm17230-201ENSMUST00000171194 3942 ntBASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Hivep2-204ENSMUST00000187083 9268 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Cdc40Q9DC48 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Ogfod1-202ENSMUST00000093301 5141 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm18198-201ENSMUST00000204986 1551 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Zfp704-201ENSMUST00000041124 13834 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm11892-201ENSMUST00000117711 1202 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm12516-201ENSMUST00000120819 385 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm28324-201ENSMUST00000187913 264 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm43852-201ENSMUST00000202098 917 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm43966-201ENSMUST00000203301 612 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC10.53□□□□□ -0.72
Cdc40Q9DC48 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC10.53□□□□□ -0.72
Cdc40Q9DC48 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms