Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Gm40377-201ENSMUST00000204604 2015 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gm12196-201ENSMUST00000120954 262 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gm43179-201ENSMUST00000198797 275 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gm6108-201ENSMUST00000208365 367 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 AC133602.1-201ENSMUST00000227510 509 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gm43937-201ENSMUST00000204640 3122 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gm18798-201ENSMUST00000187264 1700 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 AC169511.2-201ENSMUST00000226674 2063 ntBASIC10.91□□□□□ -0.66
Tnfsf4P43488 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Tnfsf4P43488 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm8752-201ENSMUST00000173427 1694 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm15617-201ENSMUST00000118973 771 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm18734-201ENSMUST00000172937 808 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm8100-201ENSMUST00000182906 988 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm4857-201ENSMUST00000192718 785 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 AC155245.1-201ENSMUST00000222266 1804 ntBASIC10.9□□□□□ -0.66
Tnfsf4P43488 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Tnfsf4P43488 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Nudt13-207ENSMUST00000224311 1574 ntBASIC10.9□□□□□ -0.67
Tnfsf4P43488 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Gm26660-202ENSMUST00000223620 4112 ntBASIC10.9□□□□□ -0.67
Tnfsf4P43488 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Tnfsf4P43488 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC10.89□□□□□ -0.67
Tnfsf4P43488 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Tnfsf4P43488 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms