Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Dcun1d2-202ENSMUST00000110838 2955 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Dctn4-202ENSMUST00000223590 1530 ntBASIC9.2□□□□□ -0.94
Sdc1P18828 Clasp1-208ENSMUST00000187713 5367 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 6430548M08Rik-203ENSMUST00000108950 3125 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Sfi1-202ENSMUST00000081318 3969 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 4930417O13Rik-203ENSMUST00000204911 3458 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Zfat-204ENSMUST00000162054 4386 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 AC124732.3-201ENSMUST00000221835 1765 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Upk1b-201ENSMUST00000057767 1769 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Pou2f1-204ENSMUST00000111426 2671 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Bmpr2-201ENSMUST00000087435 12899 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Polr3b-201ENSMUST00000077175 4975 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 2700049A03Rik-203ENSMUST00000149564 5763 ntAPPRIS P4 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Apobr-201ENSMUST00000039522 3685 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Zc3h18-202ENSMUST00000093073 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC9.19□□□□□ -0.94
Sdc1P18828 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm8801-201ENSMUST00000173255 1064 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm38321-201ENSMUST00000195053 235 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Sdc1P18828 Lrsam1-201ENSMUST00000028132 3981 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Olfr71-203ENSMUST00000217544 2707 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm7553-201ENSMUST00000185805 1426 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm7742-201ENSMUST00000167648 1527 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Gm7732-201ENSMUST00000170486 1527 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm7740-201ENSMUST00000186171 1527 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Gm7736-201ENSMUST00000096981 1527 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Ncoa2-201ENSMUST00000006037 4897 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Abcc3-201ENSMUST00000021231 4999 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Copb1-201ENSMUST00000033012 3346 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm3372-201ENSMUST00000198806 1792 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm7103-201ENSMUST00000195642 1852 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Thsd7b-202ENSMUST00000073527 6213 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Speer4b-201ENSMUST00000053257 2193 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC9.19□□□□□ -0.94
Sdc1P18828 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Sdc1P18828 Gm16478-201ENSMUST00000208113 5084 ntBASIC9.19□□□□□ -0.94
Sdc1P18828 CT025645.2-201ENSMUST00000223278 3827 ntBASIC9.18□□□□□ -0.94
Sdc1P18828 Srcap-201ENSMUST00000066582 4545 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Gm5403-201ENSMUST00000117105 2795 ntBASIC9.18□□□□□ -0.94
Sdc1P18828 Gramd1b-202ENSMUST00000118159 2781 ntTSL 5 BASIC9.18□□□□□ -0.94
Sdc1P18828 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC9.18□□□□□ -0.94
Sdc1P18828 Fyn-205ENSMUST00000135242 2114 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Svil-211ENSMUST00000143254 6594 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Sdc1P18828 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.94
Sdc1P18828 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC9.18□□□□□ -0.94
Sdc1P18828 Gm24196-201ENSMUST00000179161 110 ntBASIC9.18□□□□□ -0.94
Sdc1P18828 Gm26614-201ENSMUST00000180386 3909 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Sdc1P18828 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC9.18□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms