Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 5830411N06Rik-203ENSMUST00000164583 3342 ntAPPRIS P4 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Cdx1P18111 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Cdx1P18111 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Rpl18-207ENSMUST00000210640 2989 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC9.18□□□□□ -0.94
Cdx1P18111 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Cdx1P18111 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Tns1-217ENSMUST00000191104 9904 ntAPPRIS P3 TSL 5 BASIC9.18□□□□□ -0.94
Cdx1P18111 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC9.18□□□□□ -0.94
Cdx1P18111 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC9.18□□□□□ -0.94
Cdx1P18111 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Bcat1-203ENSMUST00000111742 2556 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Gm15953-201ENSMUST00000117656 1732 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Gm14921-201ENSMUST00000118643 908 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC9.18□□□□□ -0.94
Cdx1P18111 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC9.18□□□□□ -0.94
Cdx1P18111 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Mir3547-201ENSMUST00000175461 88 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC9.18□□□□□ -0.94
Cdx1P18111 Hmgcll1-205ENSMUST00000183425 3239 ntTSL 5 BASIC9.18□□□□□ -0.94
Cdx1P18111 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC9.18□□□□□ -0.94
Cdx1P18111 AA914427-201ENSMUST00000193194 1166 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Gm9678-201ENSMUST00000198979 1149 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Gm9333-201ENSMUST00000205452 1323 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Gm3836-201ENSMUST00000211377 1613 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC9.18□□□□□ -0.94
Cdx1P18111 Gm45925-201ENSMUST00000218882 744 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 AC156802.2-203ENSMUST00000226032 1906 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 AC161537.1-201ENSMUST00000226199 1015 ntBASIC9.18□□□□□ -0.94
Cdx1P18111 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Duxbl1-201ENSMUST00000049793 2266 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Zfp959-201ENSMUST00000054780 2028 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Nup50-201ENSMUST00000165443 4741 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Itgad-202ENSMUST00000106237 4105 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Smyd1-202ENSMUST00000114186 3292 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC9.18□□□□□ -0.94
Cdx1P18111 Cd8a-202ENSMUST00000172321 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Cdx1P18111 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC9.18□□□□□ -0.94
Cdx1P18111 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Capn15-204ENSMUST00000212149 4555 ntAPPRIS P3 TSL 5 BASIC9.17□□□□□ -0.94
Cdx1P18111 AC117656.2-201ENSMUST00000224931 2215 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Cxcr2-201ENSMUST00000027372 2220 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
Cdx1P18111 Zeb2-203ENSMUST00000076836 3913 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
Cdx1P18111 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
Cdx1P18111 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC9.17□□□□□ -0.94
Cdx1P18111 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
Cdx1P18111 Gm7103-201ENSMUST00000195642 1852 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Cherp-207ENSMUST00000212991 3646 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Gm18798-201ENSMUST00000187264 1700 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Adcy4-201ENSMUST00000002398 3444 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC9.17□□□□□ -0.94
Cdx1P18111 Nectin4-203ENSMUST00000111286 3201 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Susd2-202ENSMUST00000095541 3151 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Rhobtb1-201ENSMUST00000020101 4352 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Gm5846-201ENSMUST00000193146 1414 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
Cdx1P18111 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
Cdx1P18111 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Cdx1P18111 Gm21115-201ENSMUST00000187565 2578 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Gm25214-201ENSMUST00000104573 129 ntBASIC9.17□□□□□ -0.94
Cdx1P18111 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms