Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC12.24□□□□□ -0.45
RaraP11416 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC12.24□□□□□ -0.45
RaraP11416 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Gm10699-201ENSMUST00000098916 2130 ntBASIC12.23□□□□□ -0.45
RaraP11416 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
RaraP11416 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC12.23□□□□□ -0.45
RaraP11416 Gm18798-201ENSMUST00000187264 1700 ntBASIC12.23□□□□□ -0.45
RaraP11416 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
RaraP11416 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
RaraP11416 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gm15374-201ENSMUST00000119313 844 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC12.23□□□□□ -0.45
RaraP11416 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.23□□□□□ -0.45
RaraP11416 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC12.23□□□□□ -0.45
RaraP11416 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC12.23□□□□□ -0.45
RaraP11416 Gm7504-201ENSMUST00000201449 424 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gm6108-201ENSMUST00000208365 367 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gm18730-201ENSMUST00000218038 343 ntBASIC12.23□□□□□ -0.45
RaraP11416 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.23□□□□□ -0.45
RaraP11416 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.23□□□□□ -0.45
RaraP11416 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
RaraP11416 Gm21811-201ENSMUST00000096485 930 ntBASIC12.23□□□□□ -0.45
RaraP11416 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 AC166359.1-201ENSMUST00000220243 1871 ntBASIC12.23□□□□□ -0.45
RaraP11416 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
RaraP11416 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
RaraP11416 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
RaraP11416 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC12.23□□□□□ -0.45
RaraP11416 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC12.22□□□□□ -0.45
RaraP11416 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC12.22□□□□□ -0.45
RaraP11416 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC12.22□□□□□ -0.45
RaraP11416 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.22□□□□□ -0.45
RaraP11416 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC12.22□□□□□ -0.45
RaraP11416 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC12.22□□□□□ -0.45
RaraP11416 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC12.22□□□□□ -0.45
RaraP11416 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Gm12247-201ENSMUST00000117585 670 ntBASIC12.22□□□□□ -0.45
RaraP11416 Gm8731-201ENSMUST00000118088 412 ntBASIC12.22□□□□□ -0.45
RaraP11416 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
RaraP11416 Gm15329-201ENSMUST00000121408 155 ntBASIC12.22□□□□□ -0.45
RaraP11416 Gm3150-201ENSMUST00000166418 204 ntBASIC12.22□□□□□ -0.45
RaraP11416 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC12.22□□□□□ -0.45
RaraP11416 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC12.22□□□□□ -0.45
RaraP11416 Gm17872-201ENSMUST00000222550 532 ntBASIC12.22□□□□□ -0.45
RaraP11416 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
RaraP11416 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
RaraP11416 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms