Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC13.14□□□□□ -0.31
Col1a1P11087 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Col1a1P11087 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC13.14□□□□□ -0.31
Col1a1P11087 Gm7928-201ENSMUST00000181249 701 ntBASIC13.14□□□□□ -0.31
Col1a1P11087 Ighv1-70-201ENSMUST00000196509 351 ntBASIC13.14□□□□□ -0.31
Col1a1P11087 Gm18555-201ENSMUST00000197935 584 ntBASIC13.14□□□□□ -0.31
Col1a1P11087 Gm30055-201ENSMUST00000203175 803 ntBASIC13.14□□□□□ -0.31
Col1a1P11087 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.14□□□□□ -0.31
Col1a1P11087 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC13.14□□□□□ -0.31
Col1a1P11087 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 5730422E09Rik-201ENSMUST00000180733 1740 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col1a1P11087 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Col1a1P11087 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Gm37160-201ENSMUST00000193081 1689 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col1a1P11087 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Srp14-202ENSMUST00000110862 587 ntTSL 2 BASIC13.13□□□□□ -0.31
Col1a1P11087 Gm24140-201ENSMUST00000122773 326 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Gm16228-201ENSMUST00000162286 809 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Gm5976-201ENSMUST00000180794 996 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Milr1-206ENSMUST00000182896 918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Milr1-207ENSMUST00000182908 811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 5033404E19Rik-202ENSMUST00000194748 1065 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Gm35960-201ENSMUST00000202712 767 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Gm43811-201ENSMUST00000202862 695 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC13.13□□□□□ -0.31
Col1a1P11087 Gm45040-201ENSMUST00000207742 578 ntTSL 3 BASIC13.13□□□□□ -0.31
Col1a1P11087 CT030035.1-201ENSMUST00000223964 935 ntBASIC13.13□□□□□ -0.31
Col1a1P11087 Ggta1-201ENSMUST00000044255 1221 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Col1a1P11087 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Klk1b24-201ENSMUST00000073713 878 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col1a1P11087 Klk1b21-201ENSMUST00000085455 871 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Col1a1P11087 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Col1a1P11087 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col1a1P11087 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col1a1P11087 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Gm9544-201ENSMUST00000223349 2482 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC13.12□□□□□ -0.31
Col1a1P11087 Mir1941-201ENSMUST00000157834 83 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Mir8111-201ENSMUST00000184463 137 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Gm29808-201ENSMUST00000194419 468 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Gm37688-201ENSMUST00000195195 465 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 AC117769.1-201ENSMUST00000224716 1120 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC13.12□□□□□ -0.31
Col1a1P11087 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Ino80dos-201ENSMUST00000138611 1576 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col1a1P11087 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Btrc-209ENSMUST00000224478 2194 ntBASIC13.12□□□□□ -0.31
Col1a1P11087 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col1a1P11087 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC13.12□□□□□ -0.31
Col1a1P11087 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms