Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Tln2-205ENSMUST00000215267 4999 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Ccdc28aQ8CEI3 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm11663-201ENSMUST00000117888 290 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm13665-201ENSMUST00000120830 528 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm38114-201ENSMUST00000191877 1232 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm38151-201ENSMUST00000195085 289 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm38317-201ENSMUST00000195564 343 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm18038-201ENSMUST00000197900 485 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 AC122891.1-201ENSMUST00000218671 268 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm270-201ENSMUST00000223010 976 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm44369-201ENSMUST00000204543 2175 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Pak7-201ENSMUST00000035264 4848 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc28aQ8CEI3 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm18210-201ENSMUST00000209001 1524 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm33366-201ENSMUST00000195583 3827 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm5525-201ENSMUST00000190438 1312 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Kalrn-205ENSMUST00000114953 4722 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm12857-201ENSMUST00000117678 592 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm22846-201ENSMUST00000157706 270 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm8815-201ENSMUST00000173809 620 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm5342-201ENSMUST00000181982 1003 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm7895-201ENSMUST00000187459 1173 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Ighv5-7-201ENSMUST00000192302 244 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm5714-201ENSMUST00000197343 566 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm6722-201ENSMUST00000221586 390 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 CT485787.1-201ENSMUST00000225617 968 ntBASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc28aQ8CEI3 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms