Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 N6amt1-204ENSMUST00000120284 3473 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Gm40557-201ENSMUST00000220782 2736 ntTSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Zfp418-201ENSMUST00000051435 2725 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 St5-203ENSMUST00000084738 3161 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Apc-203ENSMUST00000115781 12346 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Rnf43-202ENSMUST00000092800 4037 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Arhgap17-202ENSMUST00000106442 3336 ntAPPRIS P4 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Slc12a6-204ENSMUST00000110991 4556 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Lpxn-201ENSMUST00000025601 1675 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm16215-201ENSMUST00000161990 637 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm2467-201ENSMUST00000182266 1010 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC9.21□□□□□ -0.94
Sdc1P18828 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm37301-201ENSMUST00000195412 568 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC9.21□□□□□ -0.94
Sdc1P18828 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm29705-201ENSMUST00000212598 474 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC9.21□□□□□ -0.94
Sdc1P18828 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC9.21□□□□□ -0.94
Sdc1P18828 AC154461.3-201ENSMUST00000224831 573 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 AC137950.2-201ENSMUST00000227127 1089 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Spata31d1a-201ENSMUST00000066510 4261 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
Sdc1P18828 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm16576-201ENSMUST00000128342 5404 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Zfp605-202ENSMUST00000112528 3158 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm1840-201ENSMUST00000051687 1432 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 AC156802.2-203ENSMUST00000226032 1906 ntBASIC9.21□□□□□ -0.94
Sdc1P18828 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Git2-203ENSMUST00000112183 4886 ntTSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Gm43517-201ENSMUST00000110746 3904 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
Sdc1P18828 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Pip5k1a-201ENSMUST00000005768 3480 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Sdc1P18828 Spata16-201ENSMUST00000047005 2022 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
Sdc1P18828 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 4732487G21Rik-201ENSMUST00000181495 2664 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Btbd7-206ENSMUST00000223554 8157 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm45416-201ENSMUST00000209713 2201 ntBASIC9.2□□□□□ -0.94
Sdc1P18828 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Rab27a-201ENSMUST00000034722 2979 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm44798-201ENSMUST00000208123 2410 ntBASIC9.2□□□□□ -0.94
Sdc1P18828 St7-204ENSMUST00000077080 1887 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Gripap1-201ENSMUST00000065932 3156 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm12058-201ENSMUST00000118614 437 ntBASIC9.2□□□□□ -0.94
Sdc1P18828 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
Sdc1P18828 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC9.2□□□□□ -0.94
Sdc1P18828 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC9.2□□□□□ -0.94
Sdc1P18828 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm42588-201ENSMUST00000200538 1297 ntBASIC9.2□□□□□ -0.94
Sdc1P18828 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC9.2□□□□□ -0.94
Sdc1P18828 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC9.2□□□□□ -0.94
Sdc1P18828 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
Sdc1P18828 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Acan-201ENSMUST00000032835 7355 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Ccdc40-201ENSMUST00000035935 4979 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Mov10-203ENSMUST00000106775 3584 ntTSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 Mov10-206ENSMUST00000166979 3584 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Sdc1P18828 Gm33914-201ENSMUST00000214108 2150 ntTSL 5 BASIC9.2□□□□□ -0.94
Sdc1P18828 AC144938.1-201ENSMUST00000223994 2167 ntBASIC9.2□□□□□ -0.94
Sdc1P18828 Lrrc61-202ENSMUST00000114545 2913 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms