Protein–RNA interactions for Protein: Q9CYB0

Trim13, E3 ubiquitin-protein ligase TRIM13, mousemouse

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim13Q9CYB0 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm15004-201ENSMUST00000119192 630 ntBASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm13786-201ENSMUST00000122371 333 ntBASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm27501-201ENSMUST00000183599 107 ntBASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm18165-201ENSMUST00000217426 928 ntBASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 D030055H07Rik-202ENSMUST00000150953 4325 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Gm14150-201ENSMUST00000122404 1354 ntBASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Pkn3-201ENSMUST00000045246 3113 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Trim13Q9CYB0 Ccdc93-201ENSMUST00000036025 7274 ntAPPRIS P4 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Fubp1-202ENSMUST00000166984 6523 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Tacc2-205ENSMUST00000207282 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Adgrv1-214ENSMUST00000224088 1492 ntBASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Elf4-201ENSMUST00000033429 5847 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Ipo7-201ENSMUST00000084731 4763 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Acot11-202ENSMUST00000102762 5689 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Als2-201ENSMUST00000027178 6342 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC10.5□□□□□ -0.73
Trim13Q9CYB0 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC10.5□□□□□ -0.73
Trim13Q9CYB0 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC10.5□□□□□ -0.73
Trim13Q9CYB0 9330118I20Rik-201ENSMUST00000203390 1066 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm45331-201ENSMUST00000209868 554 ntBASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 AC173482.6-201ENSMUST00000225889 1741 ntBASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Trim13Q9CYB0 Bcorl1-203ENSMUST00000136348 7446 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms