Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Btrc-209ENSMUST00000224478 2194 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Gm14585-201ENSMUST00000120713 634 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 AC171241.1-201ENSMUST00000228144 1166 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Gm5451-201ENSMUST00000080545 579 ntBASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
Upf3bQ3ULL6 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC12.15□□□□□ -0.47
Upf3bQ3ULL6 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Upf3bQ3ULL6 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Upf3bQ3ULL6 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 AC167565.1-201ENSMUST00000226980 1833 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm5171-201ENSMUST00000214944 1415 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm44315-201ENSMUST00000203041 219 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 CT030170.2-201ENSMUST00000223267 126 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm9826-201ENSMUST00000029124 1299 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm44663-201ENSMUST00000206898 3150 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 AC158355.1-201ENSMUST00000215895 1705 ntBASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms