Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cux1P53564 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC17.21■□□□□ 0.35
Cux1P53564 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC17.21■□□□□ 0.35
Cux1P53564 Gm3926-201ENSMUST00000223378 1123 ntBASIC17.21■□□□□ 0.35
Cux1P53564 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC17.21■□□□□ 0.35
Cux1P53564 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cux1P53564 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC17.21■□□□□ 0.35
Cux1P53564 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 AC122273.1-201ENSMUST00000213634 2327 ntBASIC17.21■□□□□ 0.35
Cux1P53564 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cux1P53564 Gm37058-201ENSMUST00000193393 1644 ntBASIC17.21■□□□□ 0.35
Cux1P53564 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Cux1P53564 Gm24346-201ENSMUST00000158712 194 ntBASIC17.21■□□□□ 0.34
Cux1P53564 Ly6i-202ENSMUST00000166694 620 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cux1P53564 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Cux1P53564 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC17.21■□□□□ 0.34
Cux1P53564 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC17.21■□□□□ 0.34
Cux1P53564 Arhgef33-210ENSMUST00000225548 456 ntBASIC17.21■□□□□ 0.34
Cux1P53564 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cux1P53564 Vps25-201ENSMUST00000007533 615 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Cux1P53564 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Cux1P53564 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cux1P53564 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Cux1P53564 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Teddm3-201ENSMUST00000170665 1346 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Cux1P53564 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC17.2■□□□□ 0.34
Cux1P53564 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Hist1h4i-201ENSMUST00000102977 727 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Cux1P53564 Psmb3-201ENSMUST00000103147 766 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC17.2■□□□□ 0.34
Cux1P53564 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Cux1P53564 Gm16288-201ENSMUST00000137940 367 ntBASIC17.2■□□□□ 0.34
Cux1P53564 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC17.2■□□□□ 0.34
Cux1P53564 AC154806.7-201ENSMUST00000227998 202 ntBASIC17.2■□□□□ 0.34
Cux1P53564 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Cux1P53564 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Cux1P53564 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Gm10238-201ENSMUST00000089689 408 ntBASIC17.2■□□□□ 0.34
Cux1P53564 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Cux1P53564 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cux1P53564 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC17.19■□□□□ 0.34
Cux1P53564 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Gm24294-201ENSMUST00000158295 277 ntBASIC17.19■□□□□ 0.34
Cux1P53564 Gm6612-201ENSMUST00000170777 395 ntBASIC17.19■□□□□ 0.34
Cux1P53564 Saa-ps-201ENSMUST00000211148 320 ntBASIC17.19■□□□□ 0.34
Cux1P53564 4930553M12Rik-201ENSMUST00000057837 498 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Cux1P53564 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC17.19■□□□□ 0.34
Cux1P53564 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC17.19■□□□□ 0.34
Cux1P53564 Katnal2-205ENSMUST00000126153 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 5031425E22Rik-202ENSMUST00000185943 1477 ntTSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cux1P53564 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC17.19■□□□□ 0.34
Cux1P53564 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms