Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Zmynd8-221ENSMUST00000177633 5093 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC9.23□□□□□ -0.93
Sdc1P18828 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC9.23□□□□□ -0.93
Sdc1P18828 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC9.23□□□□□ -0.93
Sdc1P18828 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC9.23□□□□□ -0.93
Sdc1P18828 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC9.23□□□□□ -0.93
Sdc1P18828 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Gm8738-201ENSMUST00000172606 329 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 Gm28882-201ENSMUST00000185504 314 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Gm34767-201ENSMUST00000191813 1062 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC9.23□□□□□ -0.93
Sdc1P18828 Gm18584-201ENSMUST00000203098 964 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 Gm5035-201ENSMUST00000215581 927 ntBASIC9.23□□□□□ -0.93
Sdc1P18828 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Sdc1P18828 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC9.23□□□□□ -0.93
Sdc1P18828 Bcat1-203ENSMUST00000111742 2556 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Ncam1-201ENSMUST00000114476 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Tuft1-204ENSMUST00000196733 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Exoc4-202ENSMUST00000090381 2598 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Cdc23-203ENSMUST00000133181 4133 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 5730460C07Rik-201ENSMUST00000081193 1834 ntTSL 2 BASIC9.23□□□□□ -0.93
Sdc1P18828 Pcdhb10-201ENSMUST00000051126 2851 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Sdc1P18828 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Cep112-201ENSMUST00000061287 3485 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
Sdc1P18828 Gm15631-201ENSMUST00000142962 2436 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Lhfpl2-201ENSMUST00000054274 4348 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 D030028A08Rik-202ENSMUST00000131501 3542 ntTSL 2 BASIC9.23□□□□□ -0.93
Sdc1P18828 Dglucy-201ENSMUST00000069782 3295 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
Sdc1P18828 Lrfn5-202ENSMUST00000119481 3615 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Sdc1P18828 Col6a5-203ENSMUST00000190193 9289 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
Sdc1P18828 Cfap61-204ENSMUST00000126415 2256 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gtf2i-222ENSMUST00000174354 4084 ntAPPRIS ALT2 TSL 2 BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm3294-201ENSMUST00000164104 7367 ntTSL 3 BASIC9.22□□□□□ -0.93
Sdc1P18828 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm11298-201ENSMUST00000120503 1799 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Gosr2-201ENSMUST00000021329 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Ilf3-202ENSMUST00000115414 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Lrtm2-201ENSMUST00000068351 4001 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
Sdc1P18828 Celsr2-201ENSMUST00000090558 10598 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm43482-201ENSMUST00000202797 1861 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Gm23061-201ENSMUST00000102348 116 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm25226-201ENSMUST00000158198 123 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm6548-201ENSMUST00000167498 1165 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm9034-201ENSMUST00000182071 1005 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC9.22□□□□□ -0.93
Sdc1P18828 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC9.22□□□□□ -0.93
Sdc1P18828 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC9.22□□□□□ -0.93
Sdc1P18828 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 Cacna1d-204ENSMUST00000223803 6435 ntAPPRIS ALT2 BASIC9.22□□□□□ -0.93
Sdc1P18828 Mfn2-204ENSMUST00000105716 4241 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 CT010447.1-201ENSMUST00000225657 1608 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Tbc1d31-201ENSMUST00000022992 3311 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Zc3hav1-202ENSMUST00000114898 3052 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Trim9-205ENSMUST00000221041 3767 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Sdc1P18828 Gm13347-201ENSMUST00000120298 1353 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 AC158779.1-201ENSMUST00000228912 3861 ntBASIC9.22□□□□□ -0.93
Sdc1P18828 Thsd7a-206ENSMUST00000172356 10998 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Sdc1P18828 Polh-201ENSMUST00000024749 2569 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Txlng-204ENSMUST00000112316 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
Sdc1P18828 Plxnb3-201ENSMUST00000002079 6030 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.93
Sdc1P18828 Gm44445-201ENSMUST00000204075 2683 ntBASIC9.21□□□□□ -0.93
Sdc1P18828 Aoc1-201ENSMUST00000031835 2675 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms