Protein–RNA interactions for Protein: Q91V10

Vsx1, Visual system homeobox 1, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vsx1Q91V10 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Vsx1Q91V10 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vsx1Q91V10 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vsx1Q91V10 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Vsx1Q91V10 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.18■□□□□ 0.82
Vsx1Q91V10 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Vsx1Q91V10 Spcs1-204ENSMUST00000226782 949 ntBASIC20.18■□□□□ 0.82
Vsx1Q91V10 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vsx1Q91V10 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Vsx1Q91V10 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.17■□□□□ 0.82
Vsx1Q91V10 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.17■□□□□ 0.82
Vsx1Q91V10 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vsx1Q91V10 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.17■□□□□ 0.82
Vsx1Q91V10 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vsx1Q91V10 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.17■□□□□ 0.82
Vsx1Q91V10 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.17■□□□□ 0.82
Vsx1Q91V10 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
Vsx1Q91V10 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Vsx1Q91V10 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Vsx1Q91V10 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Vsx1Q91V10 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Vsx1Q91V10 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.15■□□□□ 0.82
Vsx1Q91V10 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.14■□□□□ 0.82
Vsx1Q91V10 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vsx1Q91V10 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vsx1Q91V10 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Gm7143-201ENSMUST00000222811 859 ntBASIC20.14■□□□□ 0.81
Vsx1Q91V10 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vsx1Q91V10 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vsx1Q91V10 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Vsx1Q91V10 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Vsx1Q91V10 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Vsx1Q91V10 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vsx1Q91V10 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vsx1Q91V10 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.12■□□□□ 0.81
Vsx1Q91V10 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.12■□□□□ 0.81
Vsx1Q91V10 Gm10033-202ENSMUST00000211874 928 ntBASIC20.12■□□□□ 0.81
Vsx1Q91V10 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vsx1Q91V10 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vsx1Q91V10 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vsx1Q91V10 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.11■□□□□ 0.81
Vsx1Q91V10 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vsx1Q91V10 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.11■□□□□ 0.81
Vsx1Q91V10 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vsx1Q91V10 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Gm18671-201ENSMUST00000214826 683 ntBASIC20.1■□□□□ 0.81
Vsx1Q91V10 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vsx1Q91V10 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vsx1Q91V10 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.09■□□□□ 0.81
Vsx1Q91V10 AV356131-201ENSMUST00000206201 750 ntBASIC20.09■□□□□ 0.81
Vsx1Q91V10 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vsx1Q91V10 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vsx1Q91V10 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Vsx1Q91V10 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vsx1Q91V10 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.08■□□□□ 0.81
Vsx1Q91V10 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.08■□□□□ 0.81
Vsx1Q91V10 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vsx1Q91V10 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vsx1Q91V10 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vsx1Q91V10 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.06■□□□□ 0.8
Vsx1Q91V10 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
Vsx1Q91V10 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vsx1Q91V10 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vsx1Q91V10 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Vsx1Q91V10 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vsx1Q91V10 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vsx1Q91V10 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vsx1Q91V10 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms