Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm45417-201ENSMUST00000209533 758 ntBASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Ushbp1Q8R370 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Ushbp1Q8R370 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.76■■□□□ 1.23
Ushbp1Q8R370 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
Ushbp1Q8R370 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Ushbp1Q8R370 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC22.75■■□□□ 1.23
Ushbp1Q8R370 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC22.74■■□□□ 1.23
Ushbp1Q8R370 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Gm5297-201ENSMUST00000198555 1171 ntBASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Ushbp1Q8R370 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ushbp1Q8R370 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ushbp1Q8R370 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Ushbp1Q8R370 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Ushbp1Q8R370 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ushbp1Q8R370 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Golgb1-201ENSMUST00000023534 498 ntBASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ushbp1Q8R370 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ushbp1Q8R370 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Ushbp1Q8R370 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ushbp1Q8R370 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ushbp1Q8R370 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.67■■□□□ 1.22
Ushbp1Q8R370 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC22.67■■□□□ 1.22
Ushbp1Q8R370 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Ushbp1Q8R370 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms