Protein–RNA interactions for Protein: Q8CI96

Clip4, CAP-Gly domain-containing linker protein 4, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip4Q8CI96 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clip4Q8CI96 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Clip4Q8CI96 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.35■□□□□ 0.85
Clip4Q8CI96 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.35■□□□□ 0.85
Clip4Q8CI96 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.35■□□□□ 0.85
Clip4Q8CI96 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Clip4Q8CI96 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Clip4Q8CI96 Golph3-202ENSMUST00000226517 2359 ntBASIC20.34■□□□□ 0.85
Clip4Q8CI96 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Clip4Q8CI96 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Clip4Q8CI96 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Clip4Q8CI96 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.33■□□□□ 0.85
Clip4Q8CI96 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.33■□□□□ 0.85
Clip4Q8CI96 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Clip4Q8CI96 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Clip4Q8CI96 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Clip4Q8CI96 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Clip4Q8CI96 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clip4Q8CI96 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Clip4Q8CI96 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clip4Q8CI96 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clip4Q8CI96 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.32■□□□□ 0.84
Clip4Q8CI96 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.32■□□□□ 0.84
Clip4Q8CI96 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clip4Q8CI96 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Clip4Q8CI96 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Clip4Q8CI96 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.3■□□□□ 0.84
Clip4Q8CI96 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Clip4Q8CI96 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clip4Q8CI96 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Clip4Q8CI96 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Clip4Q8CI96 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Clip4Q8CI96 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Clip4Q8CI96 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Clip4Q8CI96 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Clip4Q8CI96 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Clip4Q8CI96 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Clip4Q8CI96 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Clip4Q8CI96 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.27■□□□□ 0.84
Clip4Q8CI96 Gm22238-201ENSMUST00000175222 88 ntBASIC20.27■□□□□ 0.84
Clip4Q8CI96 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clip4Q8CI96 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.26■□□□□ 0.83
Clip4Q8CI96 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Clip4Q8CI96 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clip4Q8CI96 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms