Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
ShhQ62226 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.86■□□□□ 0.61
ShhQ62226 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.86■□□□□ 0.61
ShhQ62226 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.86■□□□□ 0.61
ShhQ62226 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ShhQ62226 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.86■□□□□ 0.61
ShhQ62226 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.85■□□□□ 0.61
ShhQ62226 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ShhQ62226 Gm6139-201ENSMUST00000079261 882 ntBASIC18.85■□□□□ 0.61
ShhQ62226 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ShhQ62226 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ShhQ62226 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ShhQ62226 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ShhQ62226 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
ShhQ62226 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ShhQ62226 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.84■□□□□ 0.61
ShhQ62226 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.84■□□□□ 0.61
ShhQ62226 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.84■□□□□ 0.61
ShhQ62226 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.84■□□□□ 0.61
ShhQ62226 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ShhQ62226 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
ShhQ62226 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ShhQ62226 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.84■□□□□ 0.61
ShhQ62226 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
ShhQ62226 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.83■□□□□ 0.6
ShhQ62226 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
ShhQ62226 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ShhQ62226 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
ShhQ62226 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ShhQ62226 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ShhQ62226 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ShhQ62226 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
ShhQ62226 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ShhQ62226 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.83■□□□□ 0.6
ShhQ62226 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
ShhQ62226 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.82■□□□□ 0.6
ShhQ62226 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
ShhQ62226 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.82■□□□□ 0.6
ShhQ62226 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.82■□□□□ 0.6
ShhQ62226 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ShhQ62226 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.81■□□□□ 0.6
ShhQ62226 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.81■□□□□ 0.6
ShhQ62226 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
ShhQ62226 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ShhQ62226 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
ShhQ62226 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.8■□□□□ 0.6
ShhQ62226 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.8■□□□□ 0.6
ShhQ62226 Gm5874-201ENSMUST00000096101 508 ntBASIC18.8■□□□□ 0.6
ShhQ62226 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ShhQ62226 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ShhQ62226 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ShhQ62226 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ShhQ62226 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC18.79■□□□□ 0.6
ShhQ62226 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ShhQ62226 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
ShhQ62226 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
ShhQ62226 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
ShhQ62226 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ShhQ62226 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ShhQ62226 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ShhQ62226 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.78■□□□□ 0.6
ShhQ62226 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
ShhQ62226 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms