Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.6■□□□□ 0.89
Six4Q61321 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.6■□□□□ 0.89
Six4Q61321 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Six4Q61321 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Six4Q61321 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.6■□□□□ 0.89
Six4Q61321 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six4Q61321 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.59■□□□□ 0.89
Six4Q61321 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Six4Q61321 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Six4Q61321 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six4Q61321 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six4Q61321 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.58■□□□□ 0.89
Six4Q61321 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Six4Q61321 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.58■□□□□ 0.89
Six4Q61321 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Six4Q61321 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Six4Q61321 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Six4Q61321 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Six4Q61321 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Six4Q61321 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Six4Q61321 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Gm12922-201ENSMUST00000120626 809 ntBASIC20.57■□□□□ 0.88
Six4Q61321 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.57■□□□□ 0.88
Six4Q61321 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Six4Q61321 Golgb1-201ENSMUST00000023534 498 ntBASIC20.57■□□□□ 0.88
Six4Q61321 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six4Q61321 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six4Q61321 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Six4Q61321 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Six4Q61321 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Six4Q61321 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC20.56■□□□□ 0.88
Six4Q61321 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Six4Q61321 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
Six4Q61321 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six4Q61321 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six4Q61321 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six4Q61321 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six4Q61321 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six4Q61321 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Six4Q61321 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Six4Q61321 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.55■□□□□ 0.88
Six4Q61321 Gm43530-201ENSMUST00000195920 274 ntBASIC20.55■□□□□ 0.88
Six4Q61321 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six4Q61321 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six4Q61321 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Six4Q61321 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Six4Q61321 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Six4Q61321 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Six4Q61321 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
Six4Q61321 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.54■□□□□ 0.88
Six4Q61321 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Six4Q61321 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Six4Q61321 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Six4Q61321 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Six4Q61321 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.53■□□□□ 0.88
Six4Q61321 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Six4Q61321 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Six4Q61321 Gm9847-201ENSMUST00000052528 599 ntBASIC20.53■□□□□ 0.88
Six4Q61321 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Six4Q61321 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Six4Q61321 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Six4Q61321 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Six4Q61321 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.53■□□□□ 0.88
Six4Q61321 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Six4Q61321 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.52■□□□□ 0.88
Six4Q61321 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Six4Q61321 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Six4Q61321 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Six4Q61321 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Six4Q61321 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.51■□□□□ 0.87
Six4Q61321 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Six4Q61321 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Six4Q61321 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Six4Q61321 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Six4Q61321 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Six4Q61321 Gm21956-201ENSMUST00000179946 522 ntBASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms