Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6d-4Q5R1I0 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6d-4Q5R1I0 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6d-4Q5R1I0 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6d-4Q5R1I0 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6d-4Q5R1I0 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6d-4Q5R1I0 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6d-4Q5R1I0 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.33
Trav6d-4Q5R1I0 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC17.08■□□□□ 0.32
Trav6d-4Q5R1I0 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.08■□□□□ 0.32
Trav6d-4Q5R1I0 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC17.08■□□□□ 0.32
Trav6d-4Q5R1I0 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trav6d-4Q5R1I0 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Gm45417-201ENSMUST00000209533 758 ntBASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6d-4Q5R1I0 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6d-4Q5R1I0 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Gm43137-201ENSMUST00000198052 594 ntBASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6d-4Q5R1I0 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6d-4Q5R1I0 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6d-4Q5R1I0 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 81.7 ms