Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav5d-4Q5R1F6 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav5d-4Q5R1F6 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Gm5522-201ENSMUST00000189483 1242 ntBASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Trav5d-4Q5R1F6 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trav5d-4Q5R1F6 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Gm40881-201ENSMUST00000223397 166 ntBASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Gm5812-201ENSMUST00000061073 957 ntBASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.45■□□□□ 0.38
Trav5d-4Q5R1F6 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav5d-4Q5R1F6 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trav5d-4Q5R1F6 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Gm42501-201ENSMUST00000200220 1026 ntBASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav5d-4Q5R1F6 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav5d-4Q5R1F6 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Gm15546-201ENSMUST00000122095 826 ntBASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav5d-4Q5R1F6 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Trav5d-4Q5R1F6 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trav5d-4Q5R1F6 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trav5d-4Q5R1F6 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Gm5131-201ENSMUST00000212776 1238 ntBASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav5d-4Q5R1F6 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 69.6 ms