Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim40Q3UWA4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim40Q3UWA4 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim40Q3UWA4 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim40Q3UWA4 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim40Q3UWA4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim40Q3UWA4 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.02■□□□□ 0.64
Trim40Q3UWA4 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
Trim40Q3UWA4 Gm5112-201ENSMUST00000204407 2368 ntBASIC19■□□□□ 0.63
Trim40Q3UWA4 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19■□□□□ 0.63
Trim40Q3UWA4 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19■□□□□ 0.63
Trim40Q3UWA4 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim40Q3UWA4 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19■□□□□ 0.63
Trim40Q3UWA4 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim40Q3UWA4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC18.99■□□□□ 0.63
Trim40Q3UWA4 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim40Q3UWA4 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim40Q3UWA4 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim40Q3UWA4 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim40Q3UWA4 AC151971.4-201ENSMUST00000214717 704 ntBASIC18.98■□□□□ 0.63
Trim40Q3UWA4 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.98■□□□□ 0.63
Trim40Q3UWA4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim40Q3UWA4 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim40Q3UWA4 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim40Q3UWA4 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Trim40Q3UWA4 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim40Q3UWA4 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trim40Q3UWA4 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trim40Q3UWA4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trim40Q3UWA4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.96■□□□□ 0.63
Trim40Q3UWA4 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.96■□□□□ 0.63
Trim40Q3UWA4 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim40Q3UWA4 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim40Q3UWA4 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim40Q3UWA4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.95■□□□□ 0.62
Trim40Q3UWA4 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim40Q3UWA4 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim40Q3UWA4 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms