Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddb1Q3U1J4 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddb1Q3U1J4 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ddb1Q3U1J4 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddb1Q3U1J4 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Gm9988-201ENSMUST00000069786 435 ntBASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ddb1Q3U1J4 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ddb1Q3U1J4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC26.23■■□□□ 1.79
Ddb1Q3U1J4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddb1Q3U1J4 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC26.22■■□□□ 1.79
Ddb1Q3U1J4 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddb1Q3U1J4 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddb1Q3U1J4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ddb1Q3U1J4 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddb1Q3U1J4 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddb1Q3U1J4 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC26.21■■□□□ 1.79
Ddb1Q3U1J4 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Ddb1Q3U1J4 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
Ddb1Q3U1J4 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
Ddb1Q3U1J4 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Ddb1Q3U1J4 Gm44949-201ENSMUST00000206423 1450 ntBASIC26.2■■□□□ 1.78
Ddb1Q3U1J4 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC26.2■■□□□ 1.78
Ddb1Q3U1J4 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
Ddb1Q3U1J4 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC26.2■■□□□ 1.78
Ddb1Q3U1J4 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddb1Q3U1J4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ddb1Q3U1J4 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC26.18■■□□□ 1.78
Ddb1Q3U1J4 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ddb1Q3U1J4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Nespas-201ENSMUST00000143738 1083 ntBASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC26.17■■□□□ 1.78
Ddb1Q3U1J4 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 AC137127.1-201ENSMUST00000213466 1078 ntBASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddb1Q3U1J4 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms