Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col9a1Q05722 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col9a1Q05722 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col9a1Q05722 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.29■□□□□ 0.84
Col9a1Q05722 Gm6576-201ENSMUST00000169678 883 ntBASIC20.29■□□□□ 0.84
Col9a1Q05722 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col9a1Q05722 Gm10459-201ENSMUST00000202708 1155 ntBASIC20.29■□□□□ 0.84
Col9a1Q05722 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.29■□□□□ 0.84
Col9a1Q05722 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.29■□□□□ 0.84
Col9a1Q05722 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Col9a1Q05722 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col9a1Q05722 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Col9a1Q05722 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col9a1Q05722 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.28■□□□□ 0.84
Col9a1Q05722 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col9a1Q05722 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.28■□□□□ 0.84
Col9a1Q05722 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col9a1Q05722 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col9a1Q05722 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col9a1Q05722 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.27■□□□□ 0.84
Col9a1Q05722 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col9a1Q05722 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Col9a1Q05722 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col9a1Q05722 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.27■□□□□ 0.84
Col9a1Q05722 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col9a1Q05722 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col9a1Q05722 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col9a1Q05722 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col9a1Q05722 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.27■□□□□ 0.84
Col9a1Q05722 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.27■□□□□ 0.83
Col9a1Q05722 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
Col9a1Q05722 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col9a1Q05722 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col9a1Q05722 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.26■□□□□ 0.83
Col9a1Q05722 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Trmt13-210ENSMUST00000198454 880 ntBASIC20.26■□□□□ 0.83
Col9a1Q05722 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.26■□□□□ 0.83
Col9a1Q05722 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col9a1Q05722 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.25■□□□□ 0.83
Col9a1Q05722 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.25■□□□□ 0.83
Col9a1Q05722 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.25■□□□□ 0.83
Col9a1Q05722 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.25■□□□□ 0.83
Col9a1Q05722 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col9a1Q05722 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col9a1Q05722 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col9a1Q05722 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col9a1Q05722 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col9a1Q05722 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Col9a1Q05722 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col9a1Q05722 Gm15565-201ENSMUST00000118890 427 ntBASIC20.24■□□□□ 0.83
Col9a1Q05722 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.24■□□□□ 0.83
Col9a1Q05722 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Col9a1Q05722 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col9a1Q05722 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Col9a1Q05722 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col9a1Q05722 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.23■□□□□ 0.83
Col9a1Q05722 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Col9a1Q05722 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Col9a1Q05722 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col9a1Q05722 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Col9a1Q05722 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col9a1Q05722 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col9a1Q05722 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.22■□□□□ 0.83
Col9a1Q05722 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col9a1Q05722 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.22■□□□□ 0.83
Col9a1Q05722 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.22■□□□□ 0.83
Col9a1Q05722 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.22■□□□□ 0.83
Col9a1Q05722 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col9a1Q05722 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Col9a1Q05722 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col9a1Q05722 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col9a1Q05722 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col9a1Q05722 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.2■□□□□ 0.82
Col9a1Q05722 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Col9a1Q05722 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.2■□□□□ 0.82
Col9a1Q05722 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.2■□□□□ 0.82
Col9a1Q05722 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col9a1Q05722 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col9a1Q05722 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col9a1Q05722 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col9a1Q05722 Gm11421-201ENSMUST00000122124 294 ntBASIC20.19■□□□□ 0.82
Col9a1Q05722 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col9a1Q05722 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms