Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Sox1P53783 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
Sox1P53783 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Sox1P53783 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sox1P53783 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Sox1P53783 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC21.01■□□□□ 0.95
Sox1P53783 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.01■□□□□ 0.95
Sox1P53783 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
Sox1P53783 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Sox1P53783 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
Sox1P53783 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sox1P53783 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21■□□□□ 0.95
Sox1P53783 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Sox1P53783 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21■□□□□ 0.95
Sox1P53783 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21■□□□□ 0.95
Sox1P53783 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sox1P53783 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sox1P53783 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.99■□□□□ 0.95
Sox1P53783 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox1P53783 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sox1P53783 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sox1P53783 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sox1P53783 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sox1P53783 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.98■□□□□ 0.95
Sox1P53783 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.98■□□□□ 0.95
Sox1P53783 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sox1P53783 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
Sox1P53783 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sox1P53783 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sox1P53783 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Sox1P53783 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Sox1P53783 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sox1P53783 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Sox1P53783 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
Sox1P53783 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sox1P53783 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Sox1P53783 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox1P53783 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Sox1P53783 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox1P53783 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.96■□□□□ 0.95
Sox1P53783 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.96■□□□□ 0.95
Sox1P53783 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Sox1P53783 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox1P53783 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox1P53783 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.95■□□□□ 0.95
Sox1P53783 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox1P53783 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox1P53783 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox1P53783 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Sox1P53783 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.95■□□□□ 0.94
Sox1P53783 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox1P53783 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox1P53783 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Sox1P53783 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox1P53783 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox1P53783 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox1P53783 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox1P53783 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox1P53783 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.93■□□□□ 0.94
Sox1P53783 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Sox1P53783 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.93■□□□□ 0.94
Sox1P53783 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox1P53783 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox1P53783 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox1P53783 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Sox1P53783 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Sox1P53783 Gm20049-201ENSMUST00000219950 730 ntBASIC20.92■□□□□ 0.94
Sox1P53783 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox1P53783 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Sox1P53783 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.92■□□□□ 0.94
Sox1P53783 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox1P53783 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox1P53783 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Sox1P53783 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sox1P53783 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sox1P53783 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.91■□□□□ 0.94
Sox1P53783 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Sox1P53783 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Sox1P53783 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox1P53783 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms