Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Cux1P53564 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC31.97■■■□□ 2.71
Cux1P53564 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Cux1P53564 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Cux1P53564 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC31.96■■■□□ 2.71
Cux1P53564 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Cux1P53564 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Cux1P53564 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
Cux1P53564 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
Cux1P53564 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Cux1P53564 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Cux1P53564 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
Cux1P53564 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC31.95■■■□□ 2.71
Cux1P53564 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC31.95■■■□□ 2.71
Cux1P53564 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
Cux1P53564 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC31.95■■■□□ 2.7
Cux1P53564 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Cux1P53564 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC31.95■■■□□ 2.7
Cux1P53564 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Cux1P53564 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC31.94■■■□□ 2.7
Cux1P53564 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC31.94■■■□□ 2.7
Cux1P53564 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
Cux1P53564 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Cux1P53564 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cux1P53564 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cux1P53564 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cux1P53564 Gm43403-201ENSMUST00000198011 1786 ntBASIC31.91■■■□□ 2.7
Cux1P53564 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Cux1P53564 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Cux1P53564 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
Cux1P53564 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Cux1P53564 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC31.91■■■□□ 2.7
Cux1P53564 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Cux1P53564 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
Cux1P53564 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Cux1P53564 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC31.89■■■□□ 2.7
Cux1P53564 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Cux1P53564 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Cux1P53564 Gm42642-201ENSMUST00000200683 355 ntBASIC31.89■■■□□ 2.7
Cux1P53564 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Cux1P53564 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
Cux1P53564 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC31.88■■■□□ 2.69
Cux1P53564 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Cux1P53564 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC31.87■■■□□ 2.69
Cux1P53564 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
Cux1P53564 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC31.87■■■□□ 2.69
Cux1P53564 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC31.87■■■□□ 2.69
Cux1P53564 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC31.87■■■□□ 2.69
Cux1P53564 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Cux1P53564 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Cux1P53564 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Cux1P53564 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC31.86■■■□□ 2.69
Cux1P53564 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Cux1P53564 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Cux1P53564 Gm37415-201ENSMUST00000192265 2054 ntBASIC31.86■■■□□ 2.69
Cux1P53564 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Cux1P53564 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
Cux1P53564 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Cux1P53564 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
Cux1P53564 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Cux1P53564 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Cux1P53564 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Cux1P53564 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
Cux1P53564 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Cux1P53564 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Cux1P53564 Gm27011-201ENSMUST00000182352 972 ntBASIC31.84■■■□□ 2.69
Cux1P53564 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC31.84■■■□□ 2.69
Cux1P53564 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC31.83■■■□□ 2.69
Cux1P53564 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cux1P53564 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Cux1P53564 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Cux1P53564 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC31.82■■■□□ 2.69
Cux1P53564 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cux1P53564 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cux1P53564 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cux1P53564 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cux1P53564 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cux1P53564 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cux1P53564 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cux1P53564 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Cux1P53564 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
Cux1P53564 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Cux1P53564 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC31.8■■■□□ 2.68
Cux1P53564 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
Cux1P53564 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Cux1P53564 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC31.8■■■□□ 2.68
Cux1P53564 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
Cux1P53564 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Cux1P53564 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Cux1P53564 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Cux1P53564 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Cux1P53564 Gm11421-201ENSMUST00000122124 294 ntBASIC31.79■■■□□ 2.68
Cux1P53564 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
Cux1P53564 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms