Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Shmt1P50431 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Shmt1P50431 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Shmt1P50431 Gm43530-201ENSMUST00000195920 274 ntBASIC21.57■■□□□ 1.04
Shmt1P50431 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.57■■□□□ 1.04
Shmt1P50431 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.57■■□□□ 1.04
Shmt1P50431 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Shmt1P50431 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.56■■□□□ 1.04
Shmt1P50431 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Shmt1P50431 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Shmt1P50431 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Shmt1P50431 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Shmt1P50431 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Shmt1P50431 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Shmt1P50431 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Shmt1P50431 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Shmt1P50431 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Shmt1P50431 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.54■■□□□ 1.04
Shmt1P50431 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Shmt1P50431 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.54■■□□□ 1.04
Shmt1P50431 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Shmt1P50431 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.53■■□□□ 1.04
Shmt1P50431 Gm27454-201ENSMUST00000185090 204 ntBASIC21.53■■□□□ 1.04
Shmt1P50431 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Shmt1P50431 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.53■■□□□ 1.04
Shmt1P50431 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Shmt1P50431 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Shmt1P50431 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Shmt1P50431 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Shmt1P50431 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.52■■□□□ 1.04
Shmt1P50431 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Shmt1P50431 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Shmt1P50431 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.51■■□□□ 1.03
Shmt1P50431 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.51■■□□□ 1.03
Shmt1P50431 Gm12821-201ENSMUST00000120022 600 ntBASIC21.51■■□□□ 1.03
Shmt1P50431 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
Shmt1P50431 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.51■■□□□ 1.03
Shmt1P50431 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
Shmt1P50431 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Shmt1P50431 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Shmt1P50431 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Shmt1P50431 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Shmt1P50431 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Shmt1P50431 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Shmt1P50431 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
Shmt1P50431 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Shmt1P50431 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
Shmt1P50431 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.48■■□□□ 1.03
Shmt1P50431 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shmt1P50431 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shmt1P50431 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Shmt1P50431 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.48■■□□□ 1.03
Shmt1P50431 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shmt1P50431 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Shmt1P50431 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shmt1P50431 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.47■■□□□ 1.03
Shmt1P50431 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Shmt1P50431 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.47■■□□□ 1.03
Shmt1P50431 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shmt1P50431 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shmt1P50431 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Shmt1P50431 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Shmt1P50431 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.46■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms