Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Cd40lgP27548 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.62■□□□□ 0.57
Cd40lgP27548 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cd40lgP27548 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Cd40lgP27548 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cd40lgP27548 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Cd40lgP27548 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Cd40lgP27548 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Cd40lgP27548 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.61■□□□□ 0.57
Cd40lgP27548 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
Cd40lgP27548 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.61■□□□□ 0.57
Cd40lgP27548 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cd40lgP27548 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.6■□□□□ 0.57
Cd40lgP27548 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Cd40lgP27548 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cd40lgP27548 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cd40lgP27548 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cd40lgP27548 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Cd40lgP27548 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
Cd40lgP27548 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cd40lgP27548 Gm42418-201ENSMUST00000182010 1831 ntBASIC18.58■□□□□ 0.57
Cd40lgP27548 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Cd40lgP27548 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.58■□□□□ 0.57
Cd40lgP27548 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Cd40lgP27548 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.58■□□□□ 0.57
Cd40lgP27548 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC18.58■□□□□ 0.57
Cd40lgP27548 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cd40lgP27548 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cd40lgP27548 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
Cd40lgP27548 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Cd40lgP27548 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cd40lgP27548 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cd40lgP27548 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cd40lgP27548 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cd40lgP27548 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Cd40lgP27548 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cd40lgP27548 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Cd40lgP27548 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.56■□□□□ 0.56
Cd40lgP27548 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Cd40lgP27548 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
Cd40lgP27548 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cd40lgP27548 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Cd40lgP27548 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cd40lgP27548 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cd40lgP27548 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cd40lgP27548 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Cd40lgP27548 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.55■□□□□ 0.56
Cd40lgP27548 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.55■□□□□ 0.56
Cd40lgP27548 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.55■□□□□ 0.56
Cd40lgP27548 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Cd40lgP27548 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Cd40lgP27548 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.55■□□□□ 0.56
Cd40lgP27548 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cd40lgP27548 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Cd40lgP27548 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.54■□□□□ 0.56
Cd40lgP27548 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Cd40lgP27548 Gm9847-201ENSMUST00000052528 599 ntBASIC18.54■□□□□ 0.56
Cd40lgP27548 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.54■□□□□ 0.56
Cd40lgP27548 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.54■□□□□ 0.56
Cd40lgP27548 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cd40lgP27548 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.53■□□□□ 0.56
Cd40lgP27548 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cd40lgP27548 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms