Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Mir680-2-201ENSMUST00000102163 110 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gm23251-201ENSMUST00000103773 110 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gm13045-201ENSMUST00000119019 712 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 AC125486.1-201ENSMUST00000218701 320 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 AC125374.1-201ENSMUST00000213573 1400 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Sh3rf1Q69ZI1 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Gm6506-201ENSMUST00000119775 1136 ntBASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Gm9192-201ENSMUST00000183221 985 ntBASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC11.56□□□□□ -0.56
Sh3rf1Q69ZI1 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC11.55□□□□□ -0.56
Sh3rf1Q69ZI1 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms