Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm21092-201ENSMUST00000178995 955 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm42997-202ENSMUST00000200321 985 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm4797-201ENSMUST00000219075 1283 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm9387-201ENSMUST00000098624 1320 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm4294-201ENSMUST00000105169 614 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm15881-201ENSMUST00000148792 942 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Mir8115-201ENSMUST00000184992 119 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 AC122891.1-201ENSMUST00000218671 268 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm15991-202ENSMUST00000212123 3565 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Nudt13-207ENSMUST00000224311 1574 ntBASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Upf3bQ3ULL6 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Olfml3-204ENSMUST00000169286 874 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Mir3102-201ENSMUST00000175555 104 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm5342-201ENSMUST00000181982 1003 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm9132-201ENSMUST00000210182 832 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm8959-201ENSMUST00000213150 571 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 AC115122.1-201ENSMUST00000224850 1040 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm5879-201ENSMUST00000089501 1209 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Gm45416-201ENSMUST00000209713 2201 ntBASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Upf3bQ3ULL6 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 85 ms