Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Gm22495-201ENSMUST00000104492 126 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm8111-201ENSMUST00000117659 987 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Gm15528-201ENSMUST00000117821 864 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Gm8302-201ENSMUST00000119217 852 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC11.8□□□□□ -0.52
Sox9Q04887 Tnnt1-206ENSMUST00000163710 885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm6114-201ENSMUST00000182472 968 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Gm7572-201ENSMUST00000182616 766 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Gm17944-201ENSMUST00000186351 643 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Mpzl1-203ENSMUST00000191818 853 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm43777-201ENSMUST00000197269 376 ntTSL 3 BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm43726-201ENSMUST00000199110 775 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC11.8□□□□□ -0.52
Sox9Q04887 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Sox9Q04887 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Sox9Q04887 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Sox9Q04887 Gm43167-201ENSMUST00000202001 1606 ntBASIC11.79□□□□□ -0.52
Sox9Q04887 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC11.79□□□□□ -0.52
Sox9Q04887 Nptn-202ENSMUST00000114121 863 ntTSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC11.79□□□□□ -0.52
Sox9Q04887 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Sox9Q04887 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC11.79□□□□□ -0.52
Sox9Q04887 BC025446-202ENSMUST00000185307 758 ntAPPRIS P5 TSL 2 BASIC11.79□□□□□ -0.52
Sox9Q04887 Gm43811-201ENSMUST00000202862 695 ntBASIC11.79□□□□□ -0.52
Sox9Q04887 Gm18001-201ENSMUST00000212023 688 ntBASIC11.79□□□□□ -0.52
Sox9Q04887 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC11.79□□□□□ -0.52
Sox9Q04887 Gm5178-201ENSMUST00000219380 898 ntBASIC11.79□□□□□ -0.52
Sox9Q04887 AC154213.1-201ENSMUST00000228234 583 ntBASIC11.79□□□□□ -0.52
Sox9Q04887 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Gps2-202ENSMUST00000072581 1311 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sox9Q04887 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sox9Q04887 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms