Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC13.21□□□□□ -0.29
Col1a1P11087 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col1a1P11087 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 Ighv13-1-201ENSMUST00000103480 294 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Mir1249-201ENSMUST00000116791 98 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Col1a1P11087 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC13.21□□□□□ -0.3
Col1a1P11087 Mir6359-201ENSMUST00000183668 81 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Gm27316-201ENSMUST00000184884 277 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Zcwpw2-203ENSMUST00000187803 372 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Gm7904-201ENSMUST00000217049 465 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 Paupar-201ENSMUST00000194826 3482 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col1a1P11087 Gm33366-201ENSMUST00000195583 3827 ntBASIC13.21□□□□□ -0.3
Col1a1P11087 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm44153-201ENSMUST00000204162 1580 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.2□□□□□ -0.3
Col1a1P11087 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col1a1P11087 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Col1a1P11087 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 AC154354.1-203ENSMUST00000225565 1364 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC13.2□□□□□ -0.3
Col1a1P11087 Csde1-207ENSMUST00000197827 2671 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Snord17-201ENSMUST00000104526 238 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC13.2□□□□□ -0.3
Col1a1P11087 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm20443-201ENSMUST00000173840 735 ntTSL 3 BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm5808-201ENSMUST00000178090 357 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col1a1P11087 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gm7183-201ENSMUST00000213870 1005 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
Col1a1P11087 AC134793.1-202ENSMUST00000227444 803 ntBASIC13.2□□□□□ -0.3
Col1a1P11087 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col1a1P11087 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Cstb-201ENSMUST00000005185 603 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col1a1P11087 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC13.19□□□□□ -0.3
Col1a1P11087 AC107763.1-201ENSMUST00000226082 1365 ntBASIC13.19□□□□□ -0.3
Col1a1P11087 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Col1a1P11087 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Gm7445-201ENSMUST00000192115 340 ntBASIC13.19□□□□□ -0.3
Col1a1P11087 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC13.19□□□□□ -0.3
Col1a1P11087 AC154213.1-201ENSMUST00000228234 583 ntBASIC13.19□□□□□ -0.3
Col1a1P11087 Ccl27a-201ENSMUST00000074387 405 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
Col1a1P11087 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col1a1P11087 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.19□□□□□ -0.3
Col1a1P11087 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col1a1P11087 AC166361.2-201ENSMUST00000219269 1415 ntBASIC13.19□□□□□ -0.3
Col1a1P11087 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms