Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC129975.1-201ENSMUST00000224816 592 ntBASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Gm8325-201ENSMUST00000099086 453 ntBASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Gm5822-201ENSMUST00000161562 1378 ntBASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Usp40Q8BWR4 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 AC154537.1-201ENSMUST00000226101 1304 ntBASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm6158-201ENSMUST00000109467 904 ntBASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm4862-201ENSMUST00000170405 438 ntBASIC15.55■□□□□ 0.08
Usp40Q8BWR4 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm4753-201ENSMUST00000188327 1255 ntBASIC15.55■□□□□ 0.08
Usp40Q8BWR4 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm43249-201ENSMUST00000200464 458 ntBASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 CT030166.5-201ENSMUST00000222249 420 ntBASIC15.55■□□□□ 0.08
Usp40Q8BWR4 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Usp40Q8BWR4 AC155245.1-201ENSMUST00000222266 1804 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm11578-201ENSMUST00000118530 459 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm11952-201ENSMUST00000121172 821 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm45500-201ENSMUST00000211676 803 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm43727-201ENSMUST00000198021 2647 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 AC122840.1-201ENSMUST00000220915 3334 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Gm14005-209ENSMUST00000224993 1832 ntBASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Usp40Q8BWR4 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms