Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm13812-201ENSMUST00000118061 1347 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm13810-201ENSMUST00000118584 1347 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm12165-201ENSMUST00000117047 342 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm5419-201ENSMUST00000119301 527 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm19459-201ENSMUST00000176240 835 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Mir7677-201ENSMUST00000184226 67 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm5051-201ENSMUST00000204085 485 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Gm1821-202ENSMUST00000227415 750 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 AC133602.1-201ENSMUST00000227510 509 ntBASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Sh3rf1Q69ZI1 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.55
Sh3rf1Q69ZI1 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
Sh3rf1Q69ZI1 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
Sh3rf1Q69ZI1 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.55
Sh3rf1Q69ZI1 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Sh3rf1Q69ZI1 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm15131-201ENSMUST00000119124 595 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm7722-201ENSMUST00000120646 741 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm25881-201ENSMUST00000157783 103 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm37246-201ENSMUST00000192665 835 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm37835-201ENSMUST00000193305 361 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm18893-201ENSMUST00000198416 943 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 AC153954.1-201ENSMUST00000216959 255 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 AC131586.1-201ENSMUST00000228844 2964 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Gm21811-201ENSMUST00000096485 930 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 AC153380.1-201ENSMUST00000214959 2364 ntBASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Sh3rf1Q69ZI1 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 58.6 ms