Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm8546-201ENSMUST00000178288 1264 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm18065-201ENSMUST00000221395 526 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 AC154680.1-201ENSMUST00000224376 859 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm9826-201ENSMUST00000029124 1299 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Col28a1Q2UY11 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm16481-201ENSMUST00000119074 1227 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Mir7032-201ENSMUST00000185154 79 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Igkv2-116-201ENSMUST00000199327 362 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm45118-201ENSMUST00000208928 825 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm8913-201ENSMUST00000209491 641 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm14267-206ENSMUST00000226870 1209 ntBASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col28a1Q2UY11 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col28a1Q2UY11 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
Col28a1Q2UY11 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col28a1Q2UY11 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms