Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 CT025678.1-201ENSMUST00000214795 2972 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm18806-201ENSMUST00000207607 1775 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm23699-201ENSMUST00000158835 135 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm19353-201ENSMUST00000184561 445 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm9555-201ENSMUST00000200908 583 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm7504-201ENSMUST00000201449 424 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm44506-201ENSMUST00000206278 965 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm8342-201ENSMUST00000209839 757 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm6653-201ENSMUST00000218063 1288 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 AC122408.1-201ENSMUST00000218949 218 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm37600-201ENSMUST00000193764 3292 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gm6903-201ENSMUST00000160509 1366 ntBASIC10.76□□□□□ -0.69
Clrn1Q8K445 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Clrn1Q8K445 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm22920-201ENSMUST00000102175 109 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm12566-201ENSMUST00000121479 359 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Mir7070-201ENSMUST00000183657 86 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm29164-201ENSMUST00000185454 1024 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm5996-201ENSMUST00000211110 718 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 AC118639.2-201ENSMUST00000226289 223 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 AC164437.3-201ENSMUST00000228323 347 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm9333-201ENSMUST00000205452 1323 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm42498-201ENSMUST00000199981 1372 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Gm43127-201ENSMUST00000195890 2789 ntBASIC10.75□□□□□ -0.69
Clrn1Q8K445 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC10.75□□□□□ -0.69
Clrn1Q8K445 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 CT009489.1-201ENSMUST00000227740 1893 ntBASIC10.74□□□□□ -0.69
Clrn1Q8K445 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.74□□□□□ -0.69
Clrn1Q8K445 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Clrn1Q8K445 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms