Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Megf10-201ENSMUST00000075770 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Limch1-201ENSMUST00000038188 5903 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Myo18a-223ENSMUST00000169105 6475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gm12516-201ENSMUST00000120819 385 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gm11660-201ENSMUST00000120955 412 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gm11675-201ENSMUST00000121873 832 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Rn7s6-201ENSMUST00000175005 291 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gm25072-201ENSMUST00000175233 235 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 AC134860.1-201ENSMUST00000224867 660 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 AC099645.1-201ENSMUST00000226476 1105 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps53Q8CCB4 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm13263-201ENSMUST00000121271 838 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Mir1901-201ENSMUST00000122616 78 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm23771-201ENSMUST00000178702 110 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm27910-201ENSMUST00000185004 107 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm37905-201ENSMUST00000195310 341 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm9797-202ENSMUST00000218003 294 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gm5705-201ENSMUST00000066241 711 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps53Q8CCB4 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC13.31□□□□□ -0.28
Vps53Q8CCB4 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 AC169511.2-201ENSMUST00000226674 2063 ntBASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Gm37849-201ENSMUST00000194722 1881 ntBASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Gm11451-201ENSMUST00000118946 630 ntBASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Gm8737-201ENSMUST00000122208 642 ntBASIC13.3□□□□□ -0.28
Vps53Q8CCB4 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC13.3□□□□□ -0.28
Vps53Q8CCB4 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 85.1 ms